FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1544149
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT149759696.9852002624099No Hit
CACTGCCT232181.5036113742909525No Hit
CACTGACA53180.3443968166284471No Hit
CACAGACT33510.2170127364651986No Hit
CACTCACT17510.11339579276352219No Hit
AACTGACT16690.10808542439881125No Hit
CACTAACT16220.10504167667757451No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)