FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4351790
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCAACTAGGCATG164140.3771781267018859No Hit
TGGCCGATGGTTAGAA159150.3657115807518286No Hit
GTCGACCGATGCTCAA141330.3247629136516238No Hit
ACTGGGCACTTCTCGC128680.2956944154014785No Hit
GGGGGGGGGGGGGGGG125290.2879045174514395No Hit
TGTAAGCTGTTGTGAC123610.28404403705142023No Hit
GCTTTAGGAACTAGTC97070.22305763835111528No Hit
TAGTTGCGACATAGCT75430.17333097415086665No Hit
CATCAGTGATTCGCAA73000.16774706500083872No Hit
CAGGAGCCTCGTGCAC62470.14355012535071776No Hit
CAGGAGCCTTCCAATG54300.12477624150062387No Hit
TCCTTAAACAGGGAGG50130.11519397765057597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)