FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3048497
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA298685597.97795438211027No Hit
CGTGCAAA125260.41089100628932884No Hit
AGTGCTAA71340.23401695983299312No Hit
CGAGCTAA55520.18212253448174626No Hit
CGTCCTAA37970.12455318145302423No Hit
CGTGGTAA37460.12288022589492462No Hit
CGTGATAA35020.11487628165617352No Hit
CCTGCTAA31310.10270635004725279No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)