FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419298
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC27410.6537116799984737No Hit
CTCCTAGTGAACGTAA21350.5091843986854219No Hit
CGACCAGACGCGCTGT19420.4631550830197139No Hit
TAGCTTTACCCTATCC18990.45289984688693957No Hit
CCAGGACTGTAACTCG15360.3663265744172402No Hit
GTTCTCGACCGTAGAG13650.32554412374969594No Hit
CGATCAAACCCGGCTA13150.3136194305720514No Hit
CTTCCTTTGGCTCAGC13130.3131424428449456No Hit
ATCTGTACTGGGACTA13120.3129039489813927No Hit
GGGGGGGGGGGGGGGG13030.31075750420941667No Hit
TGCTGCTACTTTCTTG11210.26735162104279053No Hit
ACAGCCGACTTGCGTA10140.24183277764263125No Hit
GGCAACAGAATAGCAA10000.2384938635528908No Hit
CGCGTTGGAGCGGTTC9410.2244227256032702No Hit
AACTTACCTCACCTAA9120.2175064035602364No Hit
ATCGAAAGATTTCCGC8680.2070126735639092No Hit
GTAACTGTGTGAAAGT8530.2034352656106158No Hit
CCCTGAACTAGCTTTG8380.1998578576573225No Hit
CAATTCGGATAACGGG7860.18745617675257217No Hit
AGTGGAGTGAGTTGAA7710.18387876879927878No Hit
GGGTAGAACCAGTCTA7440.17743943448335073No Hit
CGCGATCGATATCTGG7170.1710001001674227No Hit
TTCCTAAACTAATGCC7050.168138173804788No Hit
AAGAACCCTTAACCCA7000.16694570448702353No Hit
TGGAACACTCCTAGTA6760.16122185176175416No Hit
TTTAGTCTGAGCAATA6710.16002938244398973No Hit
AGTCCTGCTCGAACGA6500.155021011309379No Hit
TGCAGATACTGCCACG6500.155021011309379No Hit
GTGAAGCGATCCCAGG6450.15382854199161455No Hit
TCCGGGAACGTTCTCC6350.15144360335608564No Hit
TGATAGAGAGACTGTT6350.15144360335608564No Hit
CACATCCTGAGCCTAT6230.14858167699345096No Hit
TACGTTTACTGCACCG6190.1476277015392394No Hit
CTATTGGGACTTGTGA6110.14571975063081627No Hit
TCTCAGAGATGCATGT5960.1421423426775229No Hit
GAGTGTTACACCTGCG5930.14142686108686423No Hit
CTTTAACTGTCCGTAA5920.14118836722331135No Hit
GCAACTTGAAGGTGCA5830.13904192245133531No Hit
CATAGGTACAAGGTGC5780.1378494531335709No Hit
ATTTCTGACGGGTAGT5770.13761095927001799No Hit
ATGTACGTGTACTTTC5700.13594150222514775No Hit
TGCAGTATGACACCGC5650.1347490329073833No Hit
AGGTGTGGATCATGTG5630.1342720451802775No Hit
TGGCAATTGAGTGGTG5600.13355656358961884No Hit
TGAGGGATGTACGTTG5560.1326025881354073No Hit
CTTAGATCTTGTCACA5550.1323640942718544No Hit
GGTCGCATGGTACTAC5480.13069463722698416No Hit
TCTATGGGATGCTCAA5330.1271172292736908No Hit
TCAAAGCACTCTGCAA5290.12616325381947924No Hit
AGACCATTGAATCCAC5260.12544777222882056No Hit
CACCAGGTGCGCCACA5230.12473229063816188No Hit
TACTGTTTGCTTAAGC5220.12449379677460899No Hit
GTAATCTCTACACAAA5210.12425530291105609No Hit
GGTCTAAACTCCTACC5200.1240168090475032No Hit
TCCATTTGAAATCTGC5160.12306283359329163No Hit
TGAACTGTGAACGTAA5130.12234735200263298No Hit
AGAGTACCTTAATCGC5130.12234735200263298No Hit
TTCTTAGACGTCCCGA5110.1218703642755272No Hit
GCATGATACTTGCGTA5030.11996241336710406No Hit
GGGATGTGACTGGAAG5030.11996241336710406No Hit
CACATTACTGATGGAC5000.1192469317764454No Hit
CGAGTCTCTGCTACGC5000.1192469317764454No Hit
GGCTGACTGAAACTGA4990.11900843791289249No Hit
CTAGCTCACGAATAGT4910.11710048700446939No Hit
GGGTGTGCTCGCAAAG4910.11710048700446939No Hit
ACCTCAGCTAATCCGT4860.11590801768670493No Hit
TCCGGGTGAACACCTA4830.11519253609604625No Hit
CGAGTCTCTTGGAACG4820.11495404223249336No Hit
CATTCTATGCCTAGCG4790.11423856064183469No Hit
CTACAACGAATCTGTG4740.11304609132407023No Hit
AGACTACTGGCCCTAG4730.11280759746051733No Hit
CTTTCGTCTCGAACGA4690.11185362200630576No Hit
CTCAATTTGGAATCTC4590.10946868337077686No Hit
TCGGACCGATAGGCGA4580.10923018950722398No Hit
GTGTGATACCGTGCAC4570.10899169564367109No Hit
TGCTAGTGAAGGCGTA4540.10827621405301241No Hit
ATGTCCAGACCGCTAG4540.10827621405301241No Hit
AGCCAATTGTTATGGC4510.10756073246235373No Hit
AGGCGATGACCTGCGA4420.10541428769037774No Hit
ACTCAGAACGGAATTA4400.10493729996327195No Hit
AGTTTGCGAAACGAAT4390.10469880609971906No Hit
CTAACAGTGCATGATC4390.10469880609971906No Hit
TGTAAGCACGCGCTGT4380.10446031223616617No Hit
TAGTACCGAACGAGCA4380.10446031223616617No Hit
TTGCGGTCTTTTGGGT4360.10398332450906038No Hit
ATTCCTAACGTTTACG4350.10374483064550749No Hit
ACCAAGTTGAAGCTAA4350.10374483064550749No Hit
CATAGTCGAAGATTCC4350.10374483064550749No Hit
TCATCATTGGACTCGC4310.10279085519129592No Hit
TGCGCAGACATCAGGG4290.10231386746419015No Hit
ACGGAATCTTACGATC4290.10231386746419015No Hit
GTCTAATCTAAGTTCC4250.10135989200997858No Hit
GTATTCACTGCTCCTT4250.10135989200997858No Hit
GGGCCTTGACTATCTT4240.10112139814642568No Hit
CGTGCAGACAGCTGAG4230.10088290428287279No Hit
TCGTTGCTGTATTGCG4220.10064441041931992No Hit
ACGAGGATGAACTAGA4210.10040591655576703No Hit
AAAGCCTTGAACCAAA4210.10040591655576703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)