FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11884205
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCAGG1167618498.24960104609437No Hit
CGCTCAGA272820.22956520861092516No Hit
CGCTCCGG195230.16427687001360208No Hit
CGCGCAGG188070.15825206650339674No Hit
CGCACAGG182230.15333798095875997No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)