FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2553942
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT250932098.25281858397724No Hit
GGTAATGA103570.40552996113459117No Hit
GGAAATGT39980.15654231771903981No Hit
GGTAAAGT37840.1481631141192713No Hit
GTTAATGT31060.12161591766766824No Hit
GGTATTGT25640.10039382256918912No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)