FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3082075
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA302210598.05423294371487No Hit
ATACGGCA90230.29275731447158165No Hit
AACCGGCA86330.28010350169934217No Hit
ATCCGCCA60690.19691279414031132No Hit
ATCCGGAA56790.18425898136807184No Hit
ATCCCGCA39230.1272843782192192No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)