FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences899421
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA37250.41415532881709455No Hit
GTCGACCGATGCTCAA33020.36712507268565No Hit
CATTCAACTAGGCATG31540.3506700421715748No Hit
GGGGGGGGGGGGGGGG31080.3455556407955785No Hit
ACTGGGCACTTCTCGC25850.2874071208032723No Hit
TGTAAGCTGTTGTGAC24980.2777342312443227No Hit
GCTTTAGGAACTAGTC22080.24549126604782412No Hit
CATCAGTGATTCGCAA14750.1639943919477086No Hit
TAGTTGCGACATAGCT14410.16021418223501563No Hit
CAGGAGCCTCGTGCAC12890.14331442116650603No Hit
CAGGAGCCTTCCAATG10880.12096671080617419No Hit
TCCTTAAACAGGGAGG9310.10351103654462149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)