FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004947533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3345779
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAAGGG328205398.09533146092436No Hit
GAGAAGGA203360.6078106174974497No Hit
GTGAAGGG56350.16842116589290565No Hit
GAGATGGG40520.12110781973346117No Hit
GAGCAGGG37230.11127453427139092No Hit
GAGAAGGC37160.11106531543177238TruSeq Adapter, Index 20 (100% over 8bp)
GAGAACGG34110.10194935170553703No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)