FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3345779
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT565071.688904138617643No Hit
GAAGCAGTGGAACCTT197050.5889510335261235No Hit
GTTCTTCCTAACGTAA172240.5147978990841894No Hit
GATACGTACCGCTCGA155660.46524292250026084No Hit
CGCTTAAGATAATAGG135350.4045395706052312No Hit
CATGGAGGATCGACAT132170.3950350576054186No Hit
TGTCCCATGAGACAAT131570.3932417532658314No Hit
AAAGCATGATCTTTGT123340.36864359540782576No Hit
TGAGCGCACAGGACAC121290.3625164722475693No Hit
TGTCGAAACTTCGCAA109490.3272481535690193No Hit
TAATTGCCTGTCTGGC109230.32647105502186485No Hit
GGAAGGACTAGGTAAT95050.28408929579628545No Hit
AATGATGGAAAGCTAA89500.267501230655103No Hit
CATGTCAGAGGTTTGT87010.26005901764581585No Hit
GGGGGGGGGGGGGGGG85780.2563827437496619No Hit
TCGACCTTGTTTCGCC84450.2524075857969101No Hit
ATGGGTACTTGGCTGC68970.20614033383555816No Hit
GCTATGATGACCTGCG68080.20348026573183703No Hit
AAACGACCTAGGGAGG65040.19439419041126146No Hit
CAGCTCACTGTTTACG63020.1883567324679843No Hit
TGTTCCTCTTTATGGC62830.18778885276044832No Hit
AGCCTACCTTAACTCG61950.18515867306238698No Hit
TTGCGATGACATTCAG59420.1775969064304606No Hit
CTGCCTTGACCATAAC56970.17027424704381253No Hit
CCTGTTGACCCTAGTA56440.16869016154384375No Hit
CAATGTGACCAACGCC56350.16842116589290565No Hit
AGCTTGTGACTCACTC56100.16767395575141095No Hit
CACAGCTCTGGACTGA54840.16390801663827767No Hit
TAACCAGACATCACAC54050.1615468325911544No Hit
GTGAGATCTCGATTAC53130.1587970992704539No Hit
CATGATGTGTCATGTG52810.1578406702893407No Hit
ATGGGTACTTTCGGGC52390.1565853572516296No Hit
CATGCAAACGAAGGCT51850.15497138334600102No Hit
CTATTCAACCGAACGA51180.15296886016679523No Hit
TGGGCCATGCGTTCTC50980.15237109205359947No Hit
ATGCCGCGATGCCACG50730.15162388191210477No Hit
ATTAGCGTGGTCGGTC49430.1477383891763323No Hit
TTGTTTGTGATACGCT49000.14645318773296143No Hit
CATTAGTCTATTCTGG48870.1460646384593842No Hit
AGAACGCGAGGAATAT48630.14534731672354928No Hit
GGGCTGACTAATACAG47100.14077439065760172No Hit
CCGCTATTGTTCGCAA46660.13945930080857105No Hit
CACTATACTACGCCAC46220.13814421095954035No Hit
GCATCTCTGAGCCTAT46080.13772577328030333No Hit
GCAGATACTCGGCTCA45930.1372774471954065No Hit
GGGTCGTACCGCTCGA44620.13336206605397427No Hit
AACCAACACCGGAATG44590.1332724008369949No Hit
ATAGGAAACAGACTTC44330.13249530228984044No Hit
AGCTCGGACCTTAAGC43460.12989501099743886No Hit
CTGCCATTGCACAGTT43350.1295662385351812No Hit
AACGTCCCTTACAGAA43270.1293271312899029No Hit
CCCAATGCTGGAATGC43250.1292673544785833No Hit
GGCTTGCGAGTACGTT43030.12860980955406798No Hit
GGTAGCCTGTGCCACG42920.1282810370918103No Hit
ATAGCCAACATGGCCC42780.12786259941257327No Hit
CTGATTACTGCTTTGA42710.12765338057295475No Hit
TTGACGTGACCTCAAA42540.12714527767673836No Hit
TGGAGTTACAAGTCTC42170.12603940666732621No Hit
GATACCATGTCTGGAT41790.12490364725225427No Hit
TTGTAACCTCATCCTC41740.1247542052239553No Hit
CGATCAAACCGATCGC41270.12334945015794528No Hit
ATCTTACTGCGCACTG41170.1230505661013474No Hit
CCTACGGGATGGAACG40660.12152625741269821No Hit
TGTTTGTTGCGCTCGA40530.12113770813912096No Hit
CGCTGAGTGTTAGCTG40400.12074915886554372No Hit
CGCTTACTGGCCACGT40400.12074915886554372No Hit
TCAGGCTCTTAAAGCA40160.1200318371297088No Hit
GGGATCAGATGAGTAA40100.11985250669575007No Hit
TTCTAACACTACGTTG39410.11779020670522469No Hit
CATGTTACTAACGTGG39130.11695333134675065No Hit
TCCAAAGTGAAGGCCA39040.11668433569581255No Hit
CGCTTCCCTGCGCTGT38650.11551868787508081No Hit
TGGGTGCACTTCTGAG38250.1143231516486893No Hit
AGCCGGTACGCGCAAA38000.11357594150719459No Hit
TACAACCGATTCCATT37660.1125597357147618No Hit
CTCGGATCTTTCTGAG37320.111543529922329No Hit
GCATAGTACGCTCCTT37130.11097565021479304No Hit
CTTAGGCCTTATGACC36520.10915245746954597No Hit
AGTGGTACTCAACGCC36300.10849491254503062No Hit
CCTTCAGTGTAGCTTG36290.10846502413937084No Hit
CCTCCCTTGTTTCGCC36120.10795692124315444No Hit
AACCACTGAAAACATG35840.10712004588468037No Hit
ACCTGCTTGCCAAACT35710.10673149661110312No Hit
TGAGATAGACTCATCC35570.1063130589318661No Hit
AACAGCTACTCGAGAG35460.10598428646960842No Hit
GTCCTGACTTTACGAC35360.10568540241301053No Hit
TACGCCTTGGGTTGAG35350.10565551400735075No Hit
ATTGAGAGATGATCAC35170.10511752270547457No Hit
ATCGCAATGTAACTCG35150.105057745894155No Hit
CGAGTCTCTTACTTTC35070.1048186386488767No Hit
GTAAGAAACGACAAAT35050.10475886183755712No Hit
GTGTACTGAATCACAC34940.10443008937529945No Hit
ACCTCCATGGAATTGA34910.1043404241583201No Hit
TATCTCCCTGGAATTA34790.10398176329040262No Hit
GCATGGGCTATGTGGG34740.10383232126210368No Hit
TTCACGCTGTGGGCAA34480.1030552227149492No Hit
AGAACAATGAGTCGGA34420.10287589228099048No Hit
GCATATCGAGCCGCTA34090.10188957489421747No Hit
TTCTATGACCAACGCC34010.10165046764893915No Hit
TGGTCCTTGTTTCTGT33980.10156080243195978No Hit
GTTGCTAGACGCTCGA33530.10021582417726935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)