FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1760551
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC172915998.21692186139452No Hit
ATGCATTA75280.4275934068368369No Hit
ATGCAATC38260.21731832818248378No Hit
ATGCATAC31050.1763652402003691No Hit
AAGCATTC23590.1339921422327442No Hit
ATCCATTC18550.10536474092485819No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)