FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1100860
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA44340.4027760114819323No Hit
GTCGACCGATGCTCAA39340.3573569754555529No Hit
CATTCAACTAGGCATG37610.34164198899042564No Hit
GGGGGGGGGGGGGGGG32770.2976763621168904No Hit
ACTGGGCACTTCTCGC31020.2817796995076577No Hit
TGTAAGCTGTTGTGAC29840.2710608070054321No Hit
GCTTTAGGAACTAGTC24690.22427919989826137No Hit
CATCAGTGATTCGCAA18310.1663245099286013No Hit
TAGTTGCGACATAGCT16910.15360717984121505No Hit
CAGGAGCCTCGTGCAC15010.1363479461511909No Hit
CAGGAGCCTTCCAATG12730.1156368657231619No Hit
TCCTTAAACAGGGAGG11610.1054630016532529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)