FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1100860
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG106949797.15104554620933No Hit
ATTGGCCG97780.888214668531875No Hit
ATTGGACC32920.2990389331976818No Hit
ATTGGACA22800.20711080428028997No Hit
ATAGGACG21420.19457515033700926No Hit
ATTGCACG19900.18076776338498993No Hit
AATGGACG18250.16577948149628471No Hit
ATTGAACG13500.12263139727122431No Hit
ATTGGAAG12860.11681776065984775No Hit
ATTCGACG12300.11173082862489325No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)