FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14502584
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGCTC1424568098.22856395798155No Hit
GGAAGCTA460060.3172262267193212No Hit
GGCAGCTC390250.269089977344727No Hit
GGAAGCAC223980.1544414429869877No Hit
GGAACCTC158330.10917364795128923No Hit
GGACGCTC146260.10085099317473355No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)