FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1629556
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTGACT157446896.61944726048077No Hit
CACTGCCT273701.6795986145919501No Hit
CACTGACA60460.37102130887186446No Hit
CACAGACT41720.256020658387929No Hit
AACTGACT22410.13752212259044794No Hit
CACTCACT20910.12831716123901235No Hit
CACTAACT17290.10610252117754776No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)