FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1676031
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT261861.5623816027269186No Hit
AAATAGGTGTTGCGTA145430.8677047142922775No Hit
GGCTTGCGACGACATT134570.8029087767469695No Hit
TATCACTACTGGTCCG124820.7447356283982814No Hit
ATGGGTTACCATGCGC121350.7240319540629022No Hit
GTGTTGTGAGGGTAGT82830.4942032695099315No Hit
CTAATCTTGCCACTTC78880.4706356863327707No Hit
CTGCTTTCTCCACTTC73700.43972933674854464No Hit
AGAGAATTGCCTCCTA65380.39008825015766413No Hit
CTGGCCAGAGGAATGC51290.30602059269786774No Hit
AGCCGAGCTGCCCTTT51290.30602059269786774No Hit
AATGGTGCTTCGTACA45280.2701620674080611No Hit
GGGGGGGGGGGGGGGG43170.2575728014577296No Hit
TCCCTGTGACCCGCAA40150.23955404166152056No Hit
GCTCCTAACCTATCTT37370.22296723628620232No Hit
TGCCGTTACAATCTGC35150.2097216578929626No Hit
GAGAGAAGACTCACGG34830.20781238533177487No Hit
CTTAATCTGGGAATTA34470.2056644537004387No Hit
TTGTCAACTAATACAG33610.20053328369224674No Hit
GCTGTTCTGATAGGTA32350.19301552298257013No Hit
TCTTTCCACCGAGTGA32220.1922398810045876No Hit
TCGTATACTTTCTGGA31120.18567675657550486No Hit
GGGATGTGAAGGTGCA30540.18221620005835215No Hit
GTAATCGTGATCCTCC30460.18173888191805523No Hit
TAGCGCGACAAGACAT29940.1786363140061252No Hit
AGTCCTGCTCCTAGTA28760.1715958714367455No Hit
TTGCGTCACCACTCAA25270.15077286756629205No Hit
TGTCAATCTGGTGTCC25240.15059387326368068No Hit
GTTGTTGGATTCCATT25130.1499375608207724No Hit
TGCAATGACACCTTGA24930.14874426547003008No Hit
GCAAATCTGGAATTGA24300.1449853851151918No Hit
TACGCCTTGCTGATCA23310.1390785731290173No Hit
TTGTTTGTGGCGCTGT22880.13651298812492133No Hit
GGTTGAACTTCTTTGT22720.13555835184432746No Hit
CCTTTCTACTCGGGCT22540.13448438602865936No Hit
CAAGTGGGATAGCGAG22520.13436505649358513No Hit
TACAACCGATCGCTAA22330.13323142591037995No Hit
TAAGGGCGATTTCTTG21420.12780193206450238No Hit
CCCACCTCTCATGATC21050.12559433566562908No Hit
AATCCAGACTACCAAC20940.12493802322272082No Hit
GAGGTGCCTTCGTACA20760.12386405740705272No Hit
CTGCCATTGTCTTTGT20560.12267076205631042No Hit
AGAACGCGAGGAGTCA20390.12165646100817944No Hit
CCTTTCTACTCATTTC19820.11825556925856384No Hit
TTCCACTCTCGAATCT19710.11759925681565556No Hit
TCTTTCCACTTCGCAA19280.11503367181155957No Hit
CGGAATTTGAGAGGCT18940.11300506971529763No Hit
GCTCCTAACGAATAGT18750.11187143913209242No Hit
GTGGTAACTTTTCCGC18750.11187143913209242No Hit
GAGAGGTTGATGTGGG18490.11032015517612741No Hit
TATTGCTTGTTCGTTT18250.10888820075523663No Hit
CGTTTGCTGGCTAATC17650.10530831470300966No Hit
AGCACATTGCTGGAAG17620.10512932040039832No Hit
CTAATCACTGCTCAGC17410.10387636028211888No Hit
CTTAGAGACGCTCTTC17050.1017284286507827No Hit
CCAGCTTTGGGAATGC16910.10089312190526309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)