FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5085296
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA485261395.42439614134555No Hit
CCCCCCCA1019862.005507643999484No Hit
CCCACCAA413190.8125190746025404No Hit
CCCACACA161520.31762162910477576No Hit
CCCACCCC134140.2637801221403828No Hit
CCCAACCA109100.2145401172321139No Hit
ACCACCCA96290.18934984315563932No Hit
CCAACCCA92040.18099241420755055No Hit
CACACCCA86120.16935100729633043No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)