FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15732758
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1550300998.53967753142837No Hit
TTAAGCCA520550.33087015003980863No Hit
TAAAGCCT241900.15375562250433142No Hit
ATAAGCCT224800.142886580979635No Hit
TTAAGCAT197780.12571222413768776No Hit
TTACGCCT169420.10768614123474092No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)