FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5610367
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA550927198.19805014538264No Hit
CAGGAAGC360760.6430238877421032No Hit
CAGGAATA122590.21850620467431095No Hit
CAGGAAAA85730.15280640286098932No Hit
AAGGAAGA61770.11009974926773952No Hit
CAGGAACA60670.10813909321796597No Hit
CACGAAGA56110.10001128268435915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)