FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004947566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18631416
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1812079397.25934410996996No Hit
CAACCATA1101100.5909910443736536No Hit
CAACCAAC818470.43929564988511877No Hit
CACCCATC596170.3199810470658806No Hit
CAACCCTC480520.25790847029554814No Hit
AAACCATC362350.19448333932321624No Hit
CAACAATC291700.15656351616001704RNA PCR Primer, Index 36 (100% over 8bp)
CCACCATC265330.14241000254623695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)