FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3681207
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT357536497.12477456442954No Hit
TCACTCCA229790.6242246089394049No Hit
ACACTCCT167030.45373704874515347No Hit
GCACTCCT159800.43409675141876025No Hit
TCACACCT71110.19317033788102653No Hit
TCACTACT55870.1517708729772599No Hit
TCACTCAT54320.14756029747851723RNA PCR Primer, Index 45 (100% over 8bp)
TCCCTCCT50630.1375364112911879No Hit
TCAATCCT41080.11159383321828954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)