FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3681207
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCCGACCAGGGAT658651.789222936933457No Hit
GAAGCAGTGGAACCTT226780.6160479429708788No Hit
GTTCTTCCTAACGTAA188730.5126851057275508No Hit
CGCTTAAGATAATAGG156750.4258114254373634No Hit
CATGGAGGATCGACAT153770.41771625447849037No Hit
TGTCCCATGAGACAAT146590.3982117821681856No Hit
AAAGCATGATCTTTGT141900.38547139565908684No Hit
TGAGCGCACAGGACAC135720.3686834236705515No Hit
GATACGTACCGCTCGA131120.356187522190412No Hit
TAATTGCCTGTCTGGC128420.34885297132163445No Hit
TGTCGAAACTTCGCAA123460.3353791297256579No Hit
GGGGGGGGGGGGGGGG111980.3041937060317445No Hit
GGAAGGACTAGGTAAT108990.2960713700696538No Hit
CATGTCAGAGGTTTGT100330.27254647728313025No Hit
AATGATGGAAAGCTAA100180.2721390022348648No Hit
TCGACCTTGTTTCGCC93030.2527160249342132No Hit
GTGAGATCTCGATTAC78510.21327244026212053No Hit
ATGGGTACTTGGCTGC77750.21120790001757575No Hit
AAACGACCTAGGGAGG73490.19963560864683783No Hit
TGTTCCTCTTTATGGC71880.195262043128789No Hit
AGCCTACCTTAACTCG71550.19436559802260509No Hit
TTGCGATGACATTCAG69590.18904125739193695No Hit
CAGCTCACTGTTTACG68830.18697671714739214No Hit
GCTATGATGACCTGCG67610.1836625867548334No Hit
CAATGTGACCAACGCC65570.1781209260984237No Hit
CCTGTTGACCCTAGTA65420.17771345105015826No Hit
TAACCAGACATCACAC64460.1751056107412596No Hit
CTGCCTTGACCATAAC64180.17434499065116413No Hit
CATGATGTGTCATGTG61490.16703760478560428No Hit
CATGCAAACGAAGGCT60770.16508172455393028No Hit
CACAGCTCTGGACTGA60070.16318017432869164No Hit
ATGGGTACTTTCGGGC59610.1619305841806777No Hit
ATGCCGCGATGCCACG59390.1613329541098884No Hit
CTATTCAACCGAACGA57950.1574211936465404No Hit
TTGTTTGTGATACGCT57950.1574211936465404No Hit
TGGGCCATGCGTTCTC57860.15717670861758115No Hit
AGAACGCGAGGAATAT57470.15611727349209104No Hit
ATTAGCGTGGTCGGTC56520.15353659818641005No Hit
CATTAGTCTATTCTGG56400.15321061814779774No Hit
AGCTTGTGACTCACTC53980.14663668736911564No Hit
CCGCTATTGTTCGCAA52870.14362137201195152No Hit
CACTATACTACGCCAC52340.1421816268414137No Hit
AACCAACACCGGAATG51470.13981827156147425No Hit
GGGCTGACTAATACAG50820.1380525463523241No Hit
CCCAATGCTGGAATGC50780.13794388633945334No Hit
TTGACGTGACCTCAAA50120.13615099612708548No Hit
CTGCCATTGCACAGTT50100.13609666612065008No Hit
AGCTCGGACCTTAAGC49580.13468408595332998No Hit
TTGTAACCTCATCCTC49130.13346166080853372No Hit
GGTAGCCTGTGCCACG48980.1330541857602683No Hit
AACGTCCCTTACAGAA48730.13237506067982596No Hit
CCTACGGGATGGAACG48550.13188609062190745No Hit
ATAGGAAACAGACTTC48370.13139712056398895No Hit
GCAGATACTCGGCTCA48340.13131562555433585No Hit
CTGATTACTGCTTTGA48040.130500675457805No Hit
CGATCAAACCGATCGC46680.12680623502019853No Hit
ATCTTACTGCGCACTG46600.12658891499445699No Hit
ATAGCCAACATGGCCC46580.1265345849880216No Hit
TGGAGTTACAAGTCTC46560.12648025498158622No Hit
CGCTGAGTGTTAGCTG46240.12561097487861997No Hit
GGGATCAGATGAGTAA46180.1254479848593138No Hit
GCATCTCTGAGCCTAT46000.12495901480139529No Hit
TGTTTGTTGCGCTCGA45940.12479602478208913No Hit
CGCTTACTGGCCACGT45530.12368225965016366No Hit
CGCTTCCCTGCGCTGT45300.12305746457615667No Hit
TCAGGCTCTTAAAGCA45080.12245983450536739No Hit
TCCAAAGTGAAGGCCA44190.12004214921899256No Hit
TGGGTGCACTTCTGAG44140.11990632420290412No Hit
CATGTTACTAACGTGG43840.11909137410637326No Hit
CTCGGATCTTTCTGAG43810.11900987909672017No Hit
GATACCATGTCTGGAT43560.11833075401627782No Hit
TTCTAACACTACGTTG42440.11528827365589601No Hit
AGCCGGTACGCGCAAA42080.114310333540059No Hit
CGAGTCTCTTACTTTC41920.1138756934885759No Hit
AGAACAATGAGTCGGA41690.11325089841456891No Hit
CCTTCAGTGTAGCTTG41590.11297924838239197No Hit
ACCTGCTTGCCAAACT41360.112354453308385No Hit
TACAACCGATTCCATT41330.1122729582987319No Hit
CTTAGGCCTTATGACC41230.11200130826655495No Hit
CCTCCCTTGTTTCGCC41090.11162099822150724No Hit
ATTGAGAGATGATCAC40940.11121352317324182No Hit
AGTGGTACTCAACGCC40720.11061589310245254No Hit
ATCGCAATGTAACTCG40260.10936630295443857No Hit
GTGTACTGAATCACAC39580.10751908273563535No Hit
TGAGATAGACTCATCC39450.10716593769380532No Hit
GCATGGGCTATGTGGG39230.10656830762301604No Hit
TATCTCCCTGGAATTA39040.10605217256187983No Hit
AACCACTGAAAACATG39030.10602500755866213No Hit
TGGTCCTTGTTTCTGT39000.10594351254900906No Hit
ACCTCCATGGAATTGA38960.10583485253613828No Hit
CCTTCTTTGGATCATC38850.10553603750074363No Hit
CATGTCAGAACAGGTG38670.10504706744282515No Hit
AACAGCTACTCGAGAG38650.10499273743638975No Hit
TACGCCTTGGGTTGAG38570.10477541741064819No Hit
GTCCTGACTTTACGAC38540.10469392240099509No Hit
TCCGGGATGCGAGTTT38090.10347149725619886No Hit
AAAGGATACTGCTGGC37860.10284670218219187No Hit
TTCACGCTGTGGGCAA37850.10281953717897417No Hit
ATTCCTAACATTGCCA37840.10279237217575647No Hit
CGAATTTCTGATAGCG37780.10262938215645032No Hit
AGAACATGAAAGCTAA37770.10260221715323262No Hit
CGGTTCACTGGAATGC37700.10241206213070878No Hit
TTCTATGACCAACGCC37680.10235773212427338No Hit
GTTGCTAGACGCTCGA37450.10173293705026638No Hit
AGGTTACTGGTCCCGA37380.10154278202774254No Hit
GGTCAGAGAACCAGTT37200.10105381196982403No Hit
AGAGAATTGCCCGCAA37000.10051051190547013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)