FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6297680
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC606976796.38100062245144No Hit
CCCAGTCC613860.9747399042186964No Hit
ACCAGTCA446390.708816580073932No Hit
ACCAGACC154820.24583656203554324No Hit
ACCACTCC147230.23378450477001053No Hit
ACAAGTCC130360.2069968623366065No Hit
ACCCGTCC93210.14800688507513876TruSeq Adapter, Index 16 (100% over 8bp)
ACCAGTAC90930.14438650423648072No Hit
ACCAGTCG80530.12787248637593526No Hit
AACAGTCC69540.11042161557907038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)