FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7289198
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCTAC717814198.47641674708247No Hit
TTACCTAA178790.24528075653864803No Hit
TTACATAC167770.23016249524296087No Hit
TTACCAAC153470.21054442477759558No Hit
ATACCTAC123140.16893490888846757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)