FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2116988
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGG204739496.7125935527268No Hit
GGACAGGA242411.1450702601998688No Hit
GGCCAGGG185580.8766228245034927ABI Solid3 GAPDH Forward Primer (100% over 8bp)
GGACAGGC28210.13325536091843693No Hit
GGAAAGGG24020.11346309001279174No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)