FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3901158
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC379376997.24725325147045No Hit
AGGCTACA197910.5073109061463289No Hit
AGGCTCCC136280.3493321726523253No Hit
AGGCAACC110000.28196755937595963No Hit
CGGCTACC81300.20839965979332292No Hit
ACGCTACC61000.156363828381214No Hit
AGTCTACC50620.1297563441419189No Hit
AGGATACC47070.12065648199842201No Hit
AGCCTACC43100.11048001644639874No Hit
AGGCTAAC40420.1036102613634208No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)