FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3552532
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC346216297.4561805495348No Hit
CCCAGTCC210570.5927321696187395No Hit
ACCAGTCA203390.572521232743294No Hit
ACCAGACC69380.19529732596356625No Hit
ACAAGTCC49520.1393935367788383No Hit
ACCACTCC42260.1189574084061734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)