FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4111790
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT400014697.28478351277667No Hit
GCGCCCCT334100.812541496525844No Hit
GCGCACCA255350.6210190695536494No Hit
GCGCACAT70730.1720175398062644No Hit
GCGCACCG48990.11914518980784523No Hit
GCGCGCCT48660.11834261963767606No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)