FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1583439
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT281551.778091862079941No Hit
AAATAGGTGTTGCGTA126740.8004097410762271No Hit
TATCACTACTGGTCCG110240.6962061689777757No Hit
GGCTTGCGACGACATT110060.6950694027367016No Hit
ATGGGTTACCATGCGC109190.6895750325715105No Hit
GTGTTGTGAGGGTAGT70540.4454860591408952No Hit
CTAATCTTGCCACTTC69150.4367076976126014No Hit
CTGCTTTCTCCACTTC62830.3967945718148915No Hit
AGAGAATTGCCTCCTA59630.37658539419579784No Hit
AGCCGAGCTGCCCTTT46300.29240153867626095No Hit
CTGGCCAGAGGAATGC45120.2849494044292202No Hit
GGGGGGGGGGGGGGGG42980.2714345168964513No Hit
AATGGTGCTTCGTACA41000.25893008824463715No Hit
TCCCTGTGACCCGCAA36030.22754270925498238No Hit
GAGAGAAGACTCACGG32050.20240754459123464No Hit
TGCCGTTACAATCTGC30980.19565010082485018No Hit
CTTAATCTGGGAATTA29650.1872506613769144No Hit
TTGTCAACTAATACAG29150.18409297737393104No Hit
TCTTTCCACCGAGTGA27880.17607246000635327No Hit
TAGCGCGACAAGACAT26760.1689992478396705No Hit
GTAATCGTGATCCTCC26620.16811509631883514No Hit
TCGTATACTTTCTGGA26290.1660310248768661No Hit
GCTGTTCTGATAGGTA26140.1650837196759711No Hit
GGGATGTGAAGGTGCA25840.16318910927418107No Hit
AGTCCTGCTCCTAGTA24630.1555475139869613No Hit
TGCAATGACACCTTGA23350.14746384293932382No Hit
GCAAATCTGGAATTGA22270.14064324549287974No Hit
GTTGTTGGATTCCATT21990.13887494245120904No Hit
TTGCGTCACCACTCAA21550.13609618052858366No Hit
CCTTTCTACTCGGGCT20980.13249642076518262No Hit
GCTCCTAACCTATCTT20520.12959135148243792No Hit
TGTCAATCTGGTGTCC20380.12870719996160257No Hit
TACGCCTTGCTGATCA20030.1264968211595142No Hit
CAAGTGGGATAGCGAG20000.1263073601193352No Hit
TTGTTTGTGGCGCTGT19640.12403382763718716No Hit
TACAACCGATCGCTAA19620.12390752027706783No Hit
CCCACCTCTCATGATC19290.1218234488350988No Hit
GGTTGAACTTCTTTGT18820.11885522587229441No Hit
TAAGGGCGATTTCTTG18710.11816053539163807No Hit
AATCCAGACTACCAAC18220.11506600506871437No Hit
AGAACGCGAGGAGTCA18090.11424500722793868No Hit
TTCCACTCTCGAATCT17750.11209778210590998No Hit
CCTTTCTACTCATTTC17710.11184516738567132No Hit
CTGCCATTGTCTTTGT17690.11171886002555198No Hit
GAGGTGCCTTCGTACA17240.10887694442286694No Hit
TCTTTCCACTTCGCAA16740.10571926041988355No Hit
CGGAATTTGAGAGGCT16360.10331942057761619No Hit
GTGGTAACTTTTCCGC16200.1023089616966615No Hit
AGCACATTGCTGGAAG15890.10035119761481182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)