FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2566561
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA250734697.69282709431025No Hit
CGTGCAAA95650.37267768036684107No Hit
CGTGCGAA64090.24971157903513688No Hit
CGTGGTAA50100.19520284146762926No Hit
CGTGCTTA43050.16773417814733413No Hit
CGAGCTAA37480.1460319859921506No Hit
CCTGCTAA36520.14229157226342953No Hit
CGTTCTAA34790.13555103502313018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)