FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3390386
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG333498698.36596776886172No Hit
TTAGATTA104380.3078705492530939No Hit
ATAGATTG57610.16992165493840525No Hit
TTAGAATG53650.1582415689540955No Hit
TAAGATTG40270.11877703600710952No Hit
TTAGATAG40210.11860006500734725No Hit
TTAGATTT36670.10815877602137337No Hit
TTAGATTC35510.10473733669263618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)