FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3229418
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC314988197.5371104019362No Hit
GGTCGCGC258650.8009183078808627No Hit
GGTCGAGA82020.2539776517007089No Hit
GGACGAGC51470.15937856294849412No Hit
GGTCGACC45430.14067550252088767No Hit
GGTAGAGC44910.13906530526553082No Hit
GGTCCAGC37890.11732764231821337No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)