FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4111790
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG125980.30638724253913746No Hit
GGACACCTGGCTCCTT116310.2828695045223613No Hit
TCGCGGTGAGTCTTGA101350.24648632347469107No Hit
GTTAAGAGAGTACGTT84090.20450947154402338No Hit
CGCTTACTGATCACAC73600.17899746825591772No Hit
TACCAGTGATACGATC70140.17058264162323464No Hit
TTGTGGTGAAAGACAT68490.16656979077238868No Hit
ATCTTACTGGTTTGGT67280.1636270334817683No Hit
ATAGATGGAGAGTAAT66550.16185165098412127No Hit
ATTCCTAACTGCGTGC64230.15620933948474996No Hit
ATATGCCGAGAACAGC63320.15399619143973792No Hit
TGGAACACTTGAGGCA59360.14436534939770757No Hit
GCTATACGACAGGTGA57290.13933104560300988No Hit
CTTTCTGCTCTTGTGA57160.1390148815965796No Hit
CTTGACGCTCAGGGTA55320.13453994489018165No Hit
AGCTCTGCTGGCCTGT54050.13145126575043958No Hit
AGGTAGCGATTGACCA52000.12646560257211578No Hit
AGTTCACGACCAGAGA50660.12320668127506512No Hit
TGTGACTGACCGTTAA50530.12289051726863483No Hit
ACTGGAACTCTGGAAG50030.12167450185928758No Hit
GCGGTTCGAAGCAAGC49430.12021528336807084No Hit
ACCCTTTCTAGGTGAC48740.11853718210317161No Hit
TGTACCCTGCTGAGAG47240.11488913587512982No Hit
TTCCAAACTCCGCTAG45710.11116812872252718No Hit
ACACTCCACCGTACAT45000.10944138684125404No Hit
ACATGTGTGTCAATGC44780.10890634006114125No Hit
CACAGCTCTCTCTGGG44290.10771464495998094No Hit
TCAGTCCACCCAGCAC44190.10747144187811149No Hit
TCCCAGACTCCTAACA43230.10513669229216473No Hit
CAGTGGAGAGATCATC43030.10465028612842582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)