FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4352077
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC421411796.83001932180886No Hit
GGGCCTAC321930.7397157724920768No Hit
GGGACTAA129240.2969616576177306No Hit
GGGACAAC106490.24468776632398737No Hit
GGGACTCC87960.2021103946460506No Hit
CGGACTAC76660.17614578050893862No Hit
GGGAATAC71160.16350813645990178No Hit
GCGACTAC70870.16284178795549803No Hit
GGCACTAC70170.16123336053107518No Hit
GGGACTTC51130.11748413458677316No Hit
TGGACTAC47620.10941901993002422No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)