FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16705150
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1647031698.59424189546337No Hit
TTAAGCCA544840.32615091753141995No Hit
TAAAGCCT267990.1604235819492791No Hit
ATAAGCCT267800.16030984456889041No Hit
TTAAGCAT219050.13112722723232056No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)