FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6962331
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG682547498.03432212573634No Hit
GCTATTAG216960.31161977217113057No Hit
ACTATTAG152130.21850440606745067No Hit
TCTATTAA142180.20421321537283993No Hit
TCAATTAG141420.2031216269378747No Hit
TCTAATAG93680.1345526376151895No Hit
TCTATAAG84280.12105141223535623No Hit
TCTTTTAG81440.11697231860995978No Hit
TATATTAG81330.11681432554700431No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)