FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4123415
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG135680.32904764618647403No Hit
GGACACCTGGCTCCTT123730.30006681355138887No Hit
TCGCGGTGAGTCTTGA111180.2696308763488516No Hit
GTTAAGAGAGTACGTT78960.19149176107668037No Hit
CGCTTACTGATCACAC75090.18210633661661513No Hit
TACCAGTGATACGATC66160.1604495303043715No Hit
TTGTGGTGAAAGACAT65630.15916418793645556No Hit
ATCTTACTGGTTTGGT65540.15894592225133777No Hit
ATAGATGGAGAGTAAT62870.15247070692617648No Hit
ATTCCTAACTGCGTGC61760.14977876347639033No Hit
ATATGCCGAGAACAGC60500.14672304388474117No Hit
GCGGTTCGAAGCAAGC58570.14204245752610398No Hit
TGGAACACTTGAGGCA56860.13789540950886583No Hit
CTTGACGCTCAGGGTA55120.1336756062632551No Hit
GCTATACGACAGGTGA53450.12962556521718044No Hit
AGGTAGCGATTGACCA53230.12909202687578136No Hit
AGCTCTGCTGGCCTGT53120.12882525770508182No Hit
CTTTCTGCTCTTGTGA52980.1284857333060097No Hit
ACTGGAACTCTGGAAG48310.11716016942267514No Hit
AGTTCACGACCAGAGA48310.11716016942267514No Hit
ACGCTCTTGCCTCAAA48280.11708741419430253No Hit
TGTGACTGACCGTTAA47560.11534128871336015No Hit
ACCCTTTCTAGGTGAC46230.11211580692217493No Hit
TTCCAAACTCCGCTAG44440.10777474496260987No Hit
TGTACCCTGCTGAGAG44070.10687743047934782No Hit
CACAGCTCTCTCTGGG43840.1063196403951579No Hit
TCAGTCCACCCAGCAC43610.10576185031096798No Hit
ACACTCCACCGTACAT43370.10517980848398717No Hit
ACATGTGTGTCAATGC42730.10362769694537174No Hit
CAGTGGAGAGATCATC42280.10253636851978276No Hit
GGGAGCTCTTGATGAA42200.10234235457745583No Hit
TCCCAGACTCCTAACA41320.1002082012118596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)