FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4277044
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG418547097.85894182991804No Hit
CTATTTGA310790.7266467214272287No Hit
CTAGTTGG83090.19426968719517498No Hit
CAATTTGG58750.1373612242474008No Hit
CTAATTGG49470.11566399597479006No Hit
CTTTTTGG49460.11564061534087562No Hit
CTATTAGG44590.10425424662453787No Hit
CTATATGG44040.10296831175924306No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)