FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16700583
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1644666198.47956206079752No Hit
TTAAGCCA563060.3371499066828984No Hit
ATAAGCCT257930.15444371013874186No Hit
TAAAGCCT257470.1541682706525874No Hit
TTAAGCAT220180.1318397088293265No Hit
TTACGCCT195830.11725937950788903No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)