FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2959718
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTAA288271097.39813049756766No Hit
CGTGCAAA119840.404903440125039No Hit
CGTGCGAA73490.24830068270017616No Hit
CGTGGTAA59920.2024517200625195No Hit
CGAGCTAA59510.20106645295261236No Hit
CCTGCTAA44720.15109547598791506No Hit
CGTGCTTA44020.14873038580026882No Hit
CGGGCTAA43140.14575712956437065No Hit
CGTCCTAA40000.13514801072264318No Hit
CGTTCTAA37120.12541735395061288No Hit
AGTGCTAA36170.12220758869595008No Hit
CGTGATAA30490.10301657117333476No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)