FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2454597
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT74270.30257512740380604No Hit
TCGCGGTGAGTCTTGA66380.27043135797851947No Hit
GGGGGGGGGGGGGGGG55690.22688042069635056No Hit
GTTAAGAGAGTACGTT48270.19665142587561216No Hit
CGCTTACTGATCACAC45890.18695533319726212No Hit
TACCAGTGATACGATC40070.16324472000902795No Hit
TTGTGGTGAAAGACAT39620.16141142517488613No Hit
ATCTTACTGGTTTGGT37940.1545671244607567No Hit
ATTCCTAACTGCGTGC37910.15444490480514722No Hit
ATATGCCGAGAACAGC36690.14947463881036274No Hit
ATAGATGGAGAGTAAT36480.14861910122109656No Hit
TGGAACACTTGAGGCA35870.14613396822370434No Hit
CTTGACGCTCAGGGTA32840.13378978300714944No Hit
CTTTCTGCTCTTGTGA32530.13252684656585176No Hit
AGGTAGCGATTGACCA31950.13016393322406897No Hit
GCGGTTCGAAGCAAGC31710.12918617597919332No Hit
GCTATACGACAGGTGA31330.12763806034147357No Hit
AGCTCTGCTGGCCTGT30190.12299371342831429No Hit
TGTGACTGACCGTTAA28920.11781974800751406No Hit
AGTTCACGACCAGAGA28900.11773826823710777No Hit
ACCCTTTCTAGGTGAC28480.1160271930585754No Hit
ACTGGAACTCTGGAAG28040.11423463810963674No Hit
ACGCTCTTGCCTCAAA27710.11289022189793273No Hit
TGTACCCTGCTGAGAG26710.10881623337761759No Hit
TTCCAAACTCCGCTAG26440.1077162564771325No Hit
ACACTCCACCGTACAT26180.10665701946185055No Hit
TCAGTCCACCCAGCAC25730.10482372462770875No Hit
CACAGCTCTCTCTGGG25670.10457928531648983No Hit
TCCCAGACTCCTAACA25370.10335708876039529No Hit
ACATGTGTGTCAATGC24730.1007497361073936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)