FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3043689
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT297067097.60097040137806No Hit
GGTAATGA151730.4985069105286381No Hit
GGTAATTT54400.1787304813336711No Hit
GGAAATGT53510.17580639809126358No Hit
GCTAATGT49790.16358438723535815No Hit
GGTAAAGT46910.15412218528239907No Hit
GGTATTGT44550.1463684364598354No Hit
GGTAATCT40350.13256939194510345No Hit
GGTTATGT32550.10694259498917269No Hit
CGTAATGT31280.10277002676686087No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)