FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004947692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17170476
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1672925597.43035079516724No Hit
CAACCATA676220.39382717171032416No Hit
CAACCCTC676000.39369904480225243No Hit
CCACCATC653380.3805252690723309No Hit
CAACCAAC509430.29668950354084533No Hit
CACCCATC393600.22923068644107478No Hit
AAACCATC274650.15995479682683228No Hit
CAACAATC194070.11302540477037444RNA PCR Primer, Index 36 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)