FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11492719
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTCAGG1131001698.41027175553496No Hit
CGCTCAGA266290.23170322009961267No Hit
CGCTCCGG165700.14417824015361377No Hit
CGCACAGG165290.1438214925467159No Hit
CGCGCAGG152100.1323446609979762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)