FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532322
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG51446596.64545143728796No Hit
CATCAGTA21390.40182445963157637No Hit
CATAAGTG16180.303951367781155No Hit
CAACAGTG14600.2742700846480138No Hit
CCTCAGTG14280.26825868553244087No Hit
CATCACTG13890.2609322928603364No Hit
CTTCAGTG10730.20156972659405398No Hit
AATCAGTG10030.18841979102873824No Hit
CATCAGGG9920.18635337258276005No Hit
CAGCAGTG9910.1861655163603984No Hit
CATCAGTC9210.1730155807950827No Hit
CATCAGAG9050.1700098812372962No Hit
CATCAGTT7550.14183144788304825No Hit
CATCATTG7400.13901360454762343No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)