FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532322
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC33190.6234948020183272No Hit
CTCCTAGTGAACGTAA28310.5318209655058405No Hit
TAGCTTTACCCTATCC25190.47320982412900464No Hit
CCAGGACTGTAACTCG17950.33720191913916764No Hit
CGACCAGACGCGCTGT17930.33682620669444435No Hit
ATCTGTACTGGGACTA17520.3291241015776165No Hit
CTTCCTTTGGCTCAGC16390.3078963484507497No Hit
GTTCTCGACCGTAGAG16180.303951367781155No Hit
CGATCAAACCCGGCTA15740.29568569399724226No Hit
GGGGGGGGGGGGGGGG14260.2678829730877176No Hit
TGCTGCTACTTTCTTG13360.2509759130751688No Hit
ACAGCCGACTTGCGTA12790.24026810840055454No Hit
AACTTACCTCACCTAA11220.21077468148977496No Hit
CGCGTTGGAGCGGTTC10960.205890419708372No Hit
ATCGAAAGATTTCCGC10680.2006304454822457No Hit
AGTGGAGTGAGTTGAA10360.1946190463666728No Hit
GGCAACAGAATAGCAA9780.1837233854696969No Hit
CCCTGAACTAGCTTTG9770.18353552924733524No Hit
GTAACTGTGTGAAAGT9700.18222053569080368No Hit
CAATTCGGATAACGGG9450.17752413013176235No Hit
CGCGATCGATATCTGG9000.16907060012548797No Hit
AAGAACCCTTAACCCA8950.1681313190136797No Hit
GTGAAGCGATCCCAGG8860.16644061301242483No Hit
GGGTAGAACCAGTCTA8720.16381062589936166No Hit
TGGAACACTCCTAGTA8410.15798708300615041No Hit
TTCCTAAACTAATGCC8250.15498138344836396No Hit
TTTAGTCTGAGCAATA8220.154417814781279No Hit
TGCAGATACTGCCACG8070.15159997144585421No Hit
TCCGGGAACGTTCTCC8010.15047283411168427No Hit
AGGTGTGGATCATGTG8000.15028497788932263No Hit
TGATAGAGAGACTGTT7840.14727927833153617No Hit
CTTTAACTGTCCGTAA7780.14615214099736626No Hit
CTATTGGGACTTGTGA7540.14164359166068657No Hit
TCTCAGAGATGCATGT7510.14108002299360162No Hit
CATAGGTACAAGGTGC7460.14014074188179335No Hit
TGCAGTATGACACCGC7420.13938931699234675No Hit
AGTCCTGCTCGAACGA7340.13788646721345352No Hit
GCAACTTGAAGGTGCA7320.1375107547687302No Hit
TGGCAATTGAGTGGTG7250.13619576121219865No Hit
CACATCCTGAGCCTAT7120.13375363032149715No Hit
ATTTCTGACGGGTAGT7100.13337791787677383No Hit
TCAAAGCACTCTGCAA7040.13225078054260392No Hit
CTTAGATCTTGTCACA6810.1279300874282859No Hit
TGAACTGTGAACGTAA6790.12755437498356256No Hit
ATGTACGTGTACTTTC6740.12661509387175432No Hit
TCCATTTGAAATCTGC6690.12567581275994605No Hit
CGAGTCTCTGCTACGC6670.12530010031522276No Hit
TCTATGGGATGCTCAA6630.12454867542577613No Hit
TACGTTTACTGCACCG6570.1234215380916062No Hit
AGAGTACCTTAATCGC6510.12229440075743629No Hit
CTACAACGAATCTGTG6500.12210654453507465No Hit
TGAGGGATGTACGTTG6490.12191868831271298No Hit
GGGATGTGACTGGAAG6480.12173083209035132No Hit
GGTCGCATGGTACTAC6390.12004012608909645No Hit
TTCTTAGACGTCCCGA6330.11891298875492654No Hit
GGTCTAAACTCCTACC6290.11816156386547992No Hit
TTGCGGTCTTTTGGGT6210.11665871408658669No Hit
TACTGTTTGCTTAAGC6130.11515586430769346No Hit
GGGTGTGCTCGCAAAG6110.11478015186297016No Hit
CTCAATTTGGAATCTC6070.11402872697352355No Hit
GCATGATACTTGCGTA6020.11308944586171528No Hit
GAGTGTTACACCTGCG5990.11252587719463032No Hit
GTAATCTCTACACAAA5960.11196230852754535No Hit
CATTCTATGCCTAGCG5950.11177445230518371No Hit
CACCAGGTGCGCCACA5880.11045945874865212No Hit
CTAGCTCACGAATAGT5870.11027160252629048No Hit
AGCCAATTGTTATGGC5820.10933232141448221No Hit
CTTTCGTCTCGAACGA5820.10933232141448221No Hit
CGAGTCTCTTGGAACG5810.10914446519212057No Hit
TAGTACCGAACGAGCA5790.10876875274739724No Hit
TCCGGGTGAACACCTA5790.10876875274739724No Hit
TGCTAGTGAAGGCGTA5740.10782947163558898No Hit
TGTAAGCACGCGCTGT5720.10745375919086568No Hit
CACATTACTGATGGAC5690.10689019052378071No Hit
AGACTACTGGCCCTAG5660.10632662185669575No Hit
ACCAAGTTGAAGCTAA5560.10444805963307922No Hit
AGCTTGTGATTGCGTA5470.10275735363182434No Hit
GGCTGACTGAAACTGA5470.10275735363182434No Hit
TGCGCAGACATCAGGG5450.10238164118710105No Hit
TCGGACCGATAGGCGA5430.10200592874237772No Hit
ATGTCCAGACCGCTAG5420.10181807252001608No Hit
CTAACAGTGCATGATC5410.10163021629765444No Hit
CATAGTCGAAGATTCC5370.10087879140820782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)