FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16055848
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1580572798.44218131611609No Hit
ACTCAGCC588850.3667511052670653No Hit
ACACAGAC430440.2680892345268839No Hit
ACTCAGAA285170.17761129776515072No Hit
ACTCACAC170620.10626657651467551No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)