FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004947708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17547252
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1722307498.15254263174656No Hit
TCTTTTAG452960.2581372855419185No Hit
TCTATTAA361860.20622032441319016No Hit
TCTAATAG336490.1917622200900745No Hit
ACTATTAG326250.18592654849887608No Hit
TCAATTAG298230.16995823619561629No Hit
TCTATAAG230860.13156476011172577No Hit
TCTATTTG186880.10650100653937153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)