FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3327190
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT623301.8733525888211973No Hit
AAATAGGTGTTGCGTA272980.8204520932077819No Hit
GGCTTGCGACGACATT244030.7334417331141293No Hit
TATCACTACTGGTCCG237780.7146571130593684No Hit
ATGGGTTACCATGCGC229230.6889597528244554No Hit
GTGTTGTGAGGGTAGT151970.4567517935555228No Hit
CTAATCTTGCCACTTC147940.44463947054421304No Hit
CTGCTTTCTCCACTTC135930.4085429446469844No Hit
AGAGAATTGCCTCCTA125200.37629350893697083No Hit
GGGGGGGGGGGGGGGG102780.3089093198765324No Hit
CTGGCCAGAGGAATGC98350.2955947811817179No Hit
AGCCGAGCTGCCCTTT97180.2920783003074667No Hit
AATGGTGCTTCGTACA87170.2619928528277616No Hit
TCCCTGTGACCCGCAA76050.22857125682633092No Hit
GAGAGAAGACTCACGG67920.20413622305909793No Hit
TGCCGTTACAATCTGC65920.1981251446415744No Hit
CTTAATCTGGGAATTA64930.1951496608249003No Hit
TTGTCAACTAATACAG61590.18511115986763604No Hit
TCTTTCCACCGAGTGA60320.18129412507250864No Hit
GTAATCGTGATCCTCC58120.1746819388132328No Hit
TAGCGCGACAAGACAT57940.17414094175565567No Hit
GCTGTTCTGATAGGTA57270.1721272304857853No Hit
TCGTATACTTTCTGGA56390.16948235598207498No Hit
GGGATGTGAAGGTGCA55120.16566532118694755No Hit
AGTCCTGCTCCTAGTA52700.15839191630174412No Hit
GCTCCTAACCTATCTT50610.15211033935543206No Hit
GCAAATCTGGAATTGA49220.14793263985525323No Hit
TGCAATGACACCTTGA48210.14489704525440386No Hit
GTTGTTGGATTCCATT47530.14285327859244587No Hit
TTGCGTCACCACTCAA45150.13570009527559293No Hit
TGTCAATCTGGTGTCC44580.13398693792659871No Hit
TACGCCTTGCTGATCA43960.13212350361716643No Hit
TTGTTTGTGGCGCTGT43650.1311917864624503No Hit
CAAGTGGGATAGCGAG43640.1311617310703627No Hit
CCTTTCTACTCGGGCT43360.1303201800919094No Hit
TACAACCGATCGCTAA42570.1279458041169876No Hit
GGTTGAACTTCTTTGT40500.12172433795485078No Hit
TAAGGGCGATTTCTTG40380.12136367324979938No Hit
CCCACCTCTCATGATC40200.12082267619222227No Hit
AATCCAGACTACCAAC39140.11763680463093482No Hit
TTCCACTCTCGAATCT38930.11700564139709485No Hit
CCTTTCTACTCATTTC38670.11622420120281679No Hit
AGAACGCGAGGAGTCA38140.11463126542217306No Hit
GAGGTGCCTTCGTACA38100.11451104385382259No Hit
CTGCCATTGTCTTTGT37770.11351921591493122No Hit
GTGGTAACTTTTCCGC37110.11153556003714847No Hit
TCTTTCCACTTCGCAA36210.10883057474926289No Hit
CGGAATTTGAGAGGCT35120.1055545370117126No Hit
AGCACATTGCTGGAAG33380.10032489878846713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)