FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2831713
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG276995297.81895269753679No Hit
CTATTTGA204670.7227780498941807No Hit
CTAATTGG39020.13779645041711502No Hit
CTATTTTG36660.12946227248312242No Hit
CTATATGG35510.125401126455965No Hit
CTTTTTGG34550.12201095238112054No Hit
CGATTTGG31990.11297048818153534No Hit
CAATTTGG31940.11279391661513721No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)